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1. FunFlux FunFlux Public

   Fungal genome assembly and annotation from Illumina short reads, ONT or PacBio HiFi long reads, a hybrid of short and long reads, or an existing assembly.

   Python 15 2

2. BacFlux BacFlux Public

   Snakemake workflow for bacterial whole-genome sequencing: assembly, QC, taxonomy, annotation, AMR and virulence, plasmids and prophages — plus an optional mobilome module that reports whether each …

   Python 13 1

3. MetaFlux MetaFlux Public

   Unified short-read workflow for multi-marker amplicon (16S, ITS, 18S, gyrB, rpoB, COI) and shotgun taxonomic profiling. Snakemake, conda-based, reproducible.

   Python 8

4. FunFluxL FunFluxL Public

   Long-read fungal genome assembly and annotation workflow

   Python 2 1

5. TabFlux TabFlux Public

   Machine-learning classification of microbial community profiles

   R 4